Protein Info for AO356_07635 in Pseudomonas fluorescens FW300-N2C3

Annotation: ligand-gated channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details PF07715: Plug" amino acids 167 to 263 (97 residues), 72.7 bits, see alignment E=3.5e-24 TIGR01783: TonB-dependent siderophore receptor" amino acids 168 to 789 (622 residues), 296.6 bits, see alignment E=2.2e-92 PF00593: TonB_dep_Rec_b-barrel" amino acids 337 to 761 (425 residues), 159.7 bits, see alignment E=2.3e-50

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 77% identity to ppf:Pput_4624)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WW47 at UniProt or InterPro

Protein Sequence (790 amino acids)

>AO356_07635 ligand-gated channel (Pseudomonas fluorescens FW300-N2C3)
MSASPFPQRHLLSRAIHGAVFGVIVSSYALPTLAQPSTVEQTHPVHQWNIPAGPLAPALD
RFAREAGISLSFDASSVANRNTRGVSGTLDTPEALSSLLQGSDMAIQQQGPNAYLLTPQT
KADSELEDYRLAPILVNAKARIDGTEDANSVVAQELWVGGKVATSILNTPASVSVVTDKE
MKQRSVSTTEELLQYTPGVITDYYGTDDRNDYFQIRGFQATTYRDGLTLGSMRGVREEPF
AYERVEVIRGANSTLFGPADPGGSVNFVSKKPRFDKFGQGYVTYGSFDHVETGIDVGDSL
NEDKTVAGRFTAKMQDSDREYDHSRDDNKFLMGGLTWSPTDFTSASVIVDYLKTQSSPNS
GGYPLDKEYDRDKFYGEPSYNFHDVERTNISGTFSHDFDNGFVLRSNLRYSELTDDFGYV
FLSDSPTRTGTTVPRYIFGTDSDAEQLNGNLMLQYDARFENIDSSTLVGVEYGDSSTEER
SVYATTGSIDLANPVFTGVPSGVAPYSNDKLDTKTKAVFLQQNLSFYERFIVTAGVRNDS
LDLSSTDINNVKASDNFSETSYRGALTYIVNDEVSTYVSMVESVSPPTVGVVPKTGRQYE
VGVKYAPIGMDALFSAAVYDLTQENVSIAVVLPSGVIEQQTVGESRVRGLDLEAKAELTP
NLSLVGGYSYMESEVLRGTLYDGSSLKGNEFATAPKHSASLWSYYNIPDTDVSVGLGARY
VGSYYFDAANTGTSDGTTLFDAAFNYKLFKGTDLAINVSNLLDEQHVVGSGTANYYNPGR
EVTAKLSYNW