Protein Info for AO356_07555 in Pseudomonas fluorescens FW300-N2C3

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF02754: CCG" amino acids 34 to 114 (81 residues), 52.9 bits, see alignment E=1.7e-18 amino acids 162 to 246 (85 residues), 47.6 bits, see alignment E=7.5e-17

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a753)

Predicted SEED Role

"Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE" in subsystem Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H1R3 at UniProt or InterPro

Protein Sequence (274 amino acids)

>AO356_07555 oxidoreductase (Pseudomonas fluorescens FW300-N2C3)
MSELFYNAVPNATRVAPPLPEPRQYPSEKPRRVYLFGTCVVDLFYPEAGMDAIHLLEREG
IRVDYPQGQSCCGQPAYTSGYTEQARTVARAQLALFAEDYPVVVPSGSCAGMLREHYADL
FKDEPETLKQVQALAARTYELAEFLLLVCKVQLNDSGEPVKVALHTSCSARREMNTHLHG
RALLAQLRNVERVEHSHESECCGFGGTFSVRMPDISGAMVADKTRALKESGAHQVLSADC
GCLMNINGALEKQQEALRGKHLASFLWQRTGGAA