Protein Info for AO356_07535 in Pseudomonas fluorescens FW300-N2C3

Annotation: symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 41 to 65 (25 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 259 to 284 (26 residues), see Phobius details amino acids 302 to 327 (26 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 386 to 401 (16 residues), see Phobius details amino acids 408 to 426 (19 residues), see Phobius details amino acids 440 to 465 (26 residues), see Phobius details PF00209: SNF" amino acids 11 to 124 (114 residues), 63 bits, see alignment E=1.2e-21 amino acids 157 to 365 (209 residues), 64.7 bits, see alignment E=3.7e-22

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 97% identity to pba:PSEBR_a757)

Predicted SEED Role

"Sodium-dependent transporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X3I8 at UniProt or InterPro

Protein Sequence (467 amino acids)

>AO356_07535 symporter (Pseudomonas fluorescens FW300-N2C3)
MSTDKVSVHGSWASRWVFILAATGSAVGLGSIWKFPYMVGVYGGGAFVLMFLACIALIGA
PVMLAETLIGRRARQSPANALKVLAVEAGHSTKWSWGAFAGMITALLILSFYSVVGGWSL
DYIIDMGRGDFQGATPDQVGAYFGNVIADPWRLTLWHTIFMVLSAVVIARGVVAGLERSL
RIMMPLLFVMILVLLGYSMTTGHFMEGVHFMFDFQPEKVLDGLLPAMGHAFFSLSVGVGS
IMIYGAYMPKNASLTRTVFGVALLDTFVSLLAGVALFPIVFAAGLNPSEGPGLMFVSLPF
AFGSMAFGQVMGVVFFVLVAIAAWSSAISLLEPMVAYLVERTRISRAWVTFWLAFTCWFV
GLGTVFSFNIWKQAKFFVNEGGLFHLYQWGATGGLDFFGVIDFFTSRIMLPLGGLCFVVF
AGWVMGRDAVRDELSLRSPVLFALSLFLMRYVAPIGILVVFAAQLWK