Protein Info for AO356_07155 in Pseudomonas fluorescens FW300-N2C3

Annotation: conjugal transfer protein TraR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 34 to 52 (19 residues), see Phobius details amino acids 64 to 88 (25 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 123 to 140 (18 residues), see Phobius details amino acids 161 to 187 (27 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 293 to 316 (24 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details PF01699: Na_Ca_ex" amino acids 4 to 139 (136 residues), 98.1 bits, see alignment E=2.5e-32 amino acids 164 to 304 (141 residues), 117 bits, see alignment E=3.7e-38 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog" amino acids 7 to 302 (296 residues), 249.3 bits, see alignment E=2.5e-78

Best Hits

KEGG orthology group: K07301, inner membrane protein (inferred from 94% identity to pba:PSEBR_a822)

Predicted SEED Role

"K+-dependent Na+/Ca+ exchanger related-protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W5X5 at UniProt or InterPro

Protein Sequence (353 amino acids)

>AO356_07155 conjugal transfer protein TraR (Pseudomonas fluorescens FW300-N2C3)
LIELFGALLLLIGGAELLVRAAVGLAARLQVRPLIIGLTVVAFGSSAPQMAVSLQATLAQ
NADIAVGSVIGSGIFNILVTLGLSALIIPLRVSRQLVRLDIPLMIGASLLVFVLAWNEEL
TRLDGVWLLLALAVYLGLLLRQSRHSGRPHPVGGNVAQLSWVKSVLMIASGLAMLVFAGH
LLLGAAVEVATDLGLSERIIGLTIVAVSTSLPELATSLIAALRGQRDIAVGNVIGSNLFN
LLGVLGVTALAAPTPLSVSPNALDFDLPVMLGVAVLCLPVFYSGYRVTRAEGLLFLGLYL
AYGLHVVSFTTGMPLAGQLERLMLFYVLPALLAFLLFTSLRAWRRQHHKRDLP