Protein Info for AO356_06335 in Pseudomonas fluorescens FW300-N2C3

Annotation: glucan biosynthesis protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF04349: MdoG" amino acids 43 to 531 (489 residues), 598.3 bits, see alignment E=6.7e-184

Best Hits

Swiss-Prot: 86% identical to OPGD_PSEF5: Glucans biosynthesis protein D (opgD) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1004)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H1N4 at UniProt or InterPro

Protein Sequence (542 amino acids)

>AO356_06335 glucan biosynthesis protein D (Pseudomonas fluorescens FW300-N2C3)
MHRRNLLKASMAFAAYTGLSASGLMAARAWAADQTADGEARPFDFNGLKDQARRLAESRY
VDTKQVLPPTLAQMSPLQFNAIQYDVNHSLWNDLEGRQLDAQFFHVGMGFKQPVRMYSVD
PKTRMAREVHFRPELFNYEKTTVNTSQLTGDLGFAGFRVFKAPELDRHDIVSFLGASYFR
AVDASGQYGLSARGLAIDTYAKKREEFPDFTKFWFETPDKNSTRFVVYALLDSPSATGAY
RFDIDCQPTRVVMEIDAHINARTAIEQLGIAPMTSMFSCGTVERRMCDTIHPQIHDSDRL
AMWRGNGEWVCRPLNNPATLQFNAFADNNPKGFGLVQTDHDFASYQDTVDWYSKRPSLWV
EPTTAWGEGSVDLLEIPTTGETLDNIVAFWTPKKPVAAGDSLNYGYKLYWSALPPVSTDL
AHVDATRSGMGGFIEGWAPGEHYPTVWARRFAVDFSGGGLDQLPPGTGIEPVVTCSHGEV
KDFNVLVLDAIKGYRITFDWYPTDDRVDPVQMRLFIRTKDRTLSETWLYQYFPPAPDKRK
YP