Protein Info for AO356_05525 in Pseudomonas fluorescens FW300-N2C3

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 TIGR04123: metallophosphoesterase, DNA ligase-associated" amino acids 8 to 215 (208 residues), 227.5 bits, see alignment E=5.5e-72 PF00149: Metallophos" amino acids 30 to 116 (87 residues), 21.6 bits, see alignment E=1.3e-08

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a1149)

Predicted SEED Role

"FIG006285: ICC-like protein phosphoesterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W4V4 at UniProt or InterPro

Protein Sequence (218 amino acids)

>AO356_05525 DEAD/DEAH box helicase (Pseudomonas fluorescens FW300-N2C3)
MPAPYPVSLAGEALWLLAEKALYWPAQETLMVADVHFGKAAAYRRLGQPVPHGTTASNIA
VLDALLASLACRQLIFLGDFLHGPGSHAPGTLKALSDWRERHPHLAMTLIRGNHDKRAGD
PPPALNIRVVPEPLLLGPFAVQHEPTPHPSRHVLAGHVHPVYHLSGKGRQRLRLACFRLG
SEISLLPAFGAFTGGYRVEQDSDCRIFVIGDNEIWPVN