Protein Info for AO356_03530 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF17773: UPF0176_N" amino acids 6 to 96 (91 residues), 100.1 bits, see alignment E=7.4e-33 PF00581: Rhodanese" amino acids 117 to 211 (95 residues), 35.5 bits, see alignment E=1.2e-12

Best Hits

Swiss-Prot: 94% identical to Y4325_PSEF5: UPF0176 protein PFL_4325 (PFL_4325) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K07146, UPF0176 protein (inferred from 99% identity to pba:PSEBR_a1537)

Predicted SEED Role

"Rhodanese domain protein UPF0176"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W3T8 at UniProt or InterPro

Protein Sequence (313 amino acids)

>AO356_03530 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MTQPIVVAALYKFVTLEDYVELREPLLKAMLDNGIKGTLLIAEEGINGTVSGTREGIDGL
LAWLKNDPRMIDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKQVGTYVEPQDWN
ALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPEYIKAHFDPARHKKVAMFCTG
GIRCEKASSYMLGQGFGEVYHLKGGILKYLEEVPQEETKWRGDCFVFDNRVTVRHDLSEG
DYDQCHACRTPVSVEDRASEHYVPGISCPHCWDKLSEKTRRSAIDRQKQIELAKARNMPH
PIGYNYKQTSSEA