Protein Info for AO356_03235 in Pseudomonas fluorescens FW300-N2C3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 262 to 285 (24 residues), see Phobius details amino acids 306 to 332 (27 residues), see Phobius details amino acids 351 to 377 (27 residues), see Phobius details amino acids 398 to 415 (18 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details amino acids 469 to 492 (24 residues), see Phobius details amino acids 710 to 731 (22 residues), see Phobius details amino acids 763 to 786 (24 residues), see Phobius details amino acids 798 to 818 (21 residues), see Phobius details PF02687: FtsX" amino acids 264 to 374 (111 residues), 37.6 bits, see alignment E=1e-13 amino acids 715 to 817 (103 residues), 32 bits, see alignment E=5.6e-12

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 98% identity to pba:PSEBR_a1603)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WU91 at UniProt or InterPro

Protein Sequence (834 amino acids)

>AO356_03235 ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
MARLPLLRLFSLAVRQLLRDARAGELRVLFFALLVAVAASTAIGYFGARLNGAMMMRATE
FLGADLLLEGSSPARPEQIRSGTELGLEHARVVEFSSVVATDNGIQLSSVKAADDTYPLR
GELKSSPAPFAPEETGGRPNPGEAWVEARLLTALDLKIGDSIDVGNQTLRLARVLTYEPD
RAGNFYSLTPRVLINLKDLEATGVVQPGSRVSYRDLWRGPAPALQTYRDLVKPGLEANQR
LQDARDGNRQIGGALGKAERYLNMASLVAVLLSGVAVALSANRFATRRFDASALLRCLGL
SRRETMVLFSLQLTVLGLLASISGALLGWIAQLGLFALLHDLLPTTVPPGGLLPAIAGIG
TGLVALAGFALPPLAALGRVPPLRVLRRDMLPIPSSSWVIYGAALGALGLIMWRLSLDLV
LTFALLGGGVVAALVLGGLLLLLLQSLRRLLARAALPWRLGLGQLLRHPLAAAGQALAFG
LILLSMALIALLRGELLDTWQNQLPKNAPNYFALNILPNDKQAFTDKLLELSAQSAPLYP
VVPGRLISINGEPATEFVTKDSAGDRALQRDLSLTWAADLPTGNVVTAGTWWPQQPADDV
PGVSVEGKVAENLKIKLGDRLVFSVGGVNREAKVTSLREINWDNFQPNFFMIFQPGTLKD
LPATYLTSFYLAPGHDQQIVDLSRAFPAVTILQVEALLEQLRSILAQVTLAVEYVLLFVL
AAGMAVLFSGLQATLDERIRQGALLRALGAERPLLVKARRIEFGLLGAVSGLLAALGSEL
VSLVLYRYAFDLPWHPHPWLLVLPLLGALLIGAAGVFGTRRALNASPLTVLREG