Protein Info for AO356_02550 in Pseudomonas fluorescens FW300-N2C3

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1153 (1152 residues), 1193.6 bits, see alignment E=0 PF13175: AAA_15" amino acids 3 to 314 (312 residues), 34.4 bits, see alignment E=4.9e-12 PF02463: SMC_N" amino acids 3 to 1146 (1144 residues), 225.7 bits, see alignment E=1.3e-70 PF13476: AAA_23" amino acids 6 to 229 (224 residues), 72.3 bits, see alignment E=2.1e-23 PF13304: AAA_21" amino acids 27 to 217 (191 residues), 30.3 bits, see alignment E=1e-10 PF06470: SMC_hinge" amino acids 524 to 614 (91 residues), 33.3 bits, see alignment 1.4e-11

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 99% identity to pba:PSEBR_a1705)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WLI5 at UniProt or InterPro

Protein Sequence (1162 amino acids)

>AO356_02550 chromosome segregation protein SMC (Pseudomonas fluorescens FW300-N2C3)
VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES
MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQNSYFLNGA
KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRET
ENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKGEERQLKAQLSALRWQAL
NEQVGQREAIIGNQEVSFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGRFYSVGGDI
ARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDRLTPEQEITS
AAAEEAAAALEEAELTMHGWQEQWDSFNLASAEPRRQAEVQQSRIQQLETSMERLAERQR
RLSEERALLAADPEDAAILELSEQLATSEATLEDLQASEDAQVERLEQLRQALQLALQNQ
QQGQGELQRLNGRLASLEALQQAALDPGTGTAEWLRDQHLAERPRLAEGLKVDAGWELAV
ETVLGADLQAVLVDDFGGFDLSGFTQGDLRLLSPAGDGVRIPGSLLDKVEAQVDLSPWLG
QVKPVDSLEQALALRGQLAAGESLISRDGYWVGRHFLRVRRASEAESGMLARGQEIQRLG
AEREEREARVEALETELQNLRAQQRQQENGREHLRRLLQDEARQQGELKAQLSAGKAKVE
QLALRRTRLEEEITELGEQRALEHEQIGEARLQLQEALDAMALDTEQRELLLAQRDSLRE
RLDRVRQEARQHKDHAHQLAVRLGSLKAQYDSTRQALERLEMQSERLTEKREQLSLNLEE
GEAPLEELRLKLEELLDKRMSVDEELKTAQIALEDADRELRDAEKRRSQAEQQSQLIRGQ
MEQQRMEWQALTVRRKALQDQLLEDGYDLDGVLATLVAGANEKDAEEELERIAQRIQRLG
AINLAAIDEYQQQSERKRYLDAQNDDLVEALETLENVIRKIDKETRNRFKDTFDQINGGL
QALFPKVFGGGSAYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAI
FKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSETVQFIYITHNKIAMEMADQLMGVTM
HEPGCSRLVAVDVEEAMAMVDA