Protein Info for AO356_01905 in Pseudomonas fluorescens FW300-N2C3

Updated annotation (from data): L-aspartate transporter
Rationale: Specifically important for aspartate utilization
Original annotation: amino acid:proton symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 49 to 72 (24 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 196 to 219 (24 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details amino acids 309 to 345 (37 residues), see Phobius details amino acids 347 to 377 (31 residues), see Phobius details PF00375: SDF" amino acids 8 to 404 (397 residues), 387.8 bits, see alignment E=3e-120

Best Hits

Swiss-Prot: 40% identical to DCTA_OCHA4: C4-dicarboxylate transport protein (dctA) from Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1786)

Predicted SEED Role

"Proton/glutamate symport protein @ Sodium/glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WTL5 at UniProt or InterPro

Protein Sequence (431 amino acids)

>AO356_01905 L-aspartate transporter (Pseudomonas fluorescens FW300-N2C3)
VKKNKLPRRIAMGIALGVLVGWACHHFAGSEQSAKEIASYFSMVTDIFLRMIKMIIAPLV
FATLVGGIASMGNSRSVGRIGARAMAWFVTASVVSLLIGMGLVNLFQPGAGLNMDVAQHA
TAAVPVNTGDFSLKAFIGHVFPRSIAEAMANNEILQIVVFSLFFGFALAGVKRAGYTRIT
DSIEELAKVMFKITDYVMAFAPIGVFAAIASAITTQGLGLLVDYGKLIAEFYLGILILWA
LLFGAGYLFLGRSVFHLGKLIREPILLAFSTASSESAYPKTIEALEKFGAPKRVSSFVLP
LGYSFNLDGSMMYQAFAILFIAQAYNIDLSFTQQLLILLTLMITSKGMAGVARASVVVVA
ATLPMFNLPEAGLLLIIGIDQFLDMARTATNVVGNSIATAVVAKSESHEEADEEEGEHAP
ARSRSEPVPVA