Protein Info for AO356_01645 in Pseudomonas fluorescens FW300-N2C3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 254 to 276 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 96 to 274 (179 residues), 40.4 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1832)

Predicted SEED Role

"ABC-type spermidine/putrescine transport system, permease component I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WTG9 at UniProt or InterPro

Protein Sequence (289 amino acids)

>AO356_01645 ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
MKLIDAMRRGRQGYLMSAPALALYLGLLVIPLGLTLVLSFNVFDYSSGIDGDAYTFEHYT
SLLGDPYFYEIFLRTFWISALTTVLCVLIGVPEAYILSRMGAPWRSIFLILILTPLLISV
VVRAFGWSLLLGADGLINQALQALGSAPMKLLYTPFAVVIALVHVMLPFMIIPVWTSLQK
LDPAAEQAALSLGASQFTVIRKIVLPQIMPGVLSGTLIVFGLAASSFAIPGLLGGRRLKM
VATLIYDQYLSELNWPMGAAIAVALLLLNLLIMLSWNRMIEGRYKKSLG