Protein Info for AO356_01505 in Pseudomonas fluorescens FW300-N2C3

Annotation: isochorismatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 PF00857: Isochorismatase" amino acids 19 to 203 (185 residues), 127.5 bits, see alignment E=3.1e-41

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a1860)

Predicted SEED Role

"Amidases related to nicotinamidase" in subsystem NAD and NADP cofactor biosynthesis global

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W2M1 at UniProt or InterPro

Protein Sequence (214 amino acids)

>AO356_01505 isochorismatase (Pseudomonas fluorescens FW300-N2C3)
MFSLPHHSPRDLPFTRQHTALLLVDMQRAWLEPQFDAHLHSPEAEYFLQRARQQVIPNQQ
RLLEAMRAAQHNVLHTHIESLTADGRDRSLDHKLSDMHLPKGSPEAQIIAELAPQENEIV
LPKTSSGVFNSTNIDYVLRNLQTRHLIVAGIVTDQCVDMAVRDAADRGYLVTLVEDACAT
HTEQRHLACLNAIKGYCWITDTDTVLARLQEMQP