Protein Info for AO356_00730 in Pseudomonas fluorescens FW300-N2C3

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 24 to 788 (765 residues), 866.2 bits, see alignment E=1.1e-264 PF07244: POTRA" amino acids 93 to 172 (80 residues), 56.5 bits, see alignment E=7.4e-19 amino acids 177 to 263 (87 residues), 68.3 bits, see alignment E=1.5e-22 amino acids 266 to 344 (79 residues), 60.6 bits, see alignment E=4.1e-20 amino acids 348 to 420 (73 residues), 58.2 bits, see alignment E=2.3e-19 PF01103: Omp85" amino acids 448 to 788 (341 residues), 323.2 bits, see alignment E=4.8e-100

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 99% identity to pba:PSEBR_a3657)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W2F0 at UniProt or InterPro

Protein Sequence (788 amino acids)

>AO356_00730 outer membrane protein assembly factor BamA (Pseudomonas fluorescens FW300-N2C3)
MNFSRLLCSAALLLNVTLAHAQGFKISDIRINGLQRISAGSVFGALPLNVGDNADERRLV
ESTRALFKTGFFQDIQLGHDGDVLVITVVERPSIASIEIEGNKAISTEDLMKGLKQSGLA
EGEIFQRATLEGVRNELQRQYVAQGRYSATVDTEVVPQPRNRVGLKVNINEGTVAAIQHI
NVVGNTVFPDEDLIDLFELKTTNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDI
ASTQVSITPDKKHVYITVNVNEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQKGQVFSRKL
MTTTSELITRRLGNEGYTFANVNGVPQPHDEDHTVDITFAVDPGKRAYVNRINFRGNTKS
EDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPAVPGVDDQVDVNYSVEE
QASGSISASVGFSQSAGLILGGSITQNNFLGTGNYASLGLTRSSYQSKYNIGFTDPYFTP
DGVSLGYNAFYNATDYNEYYDDDNSYYSINSYGAGTSLGYPINETSRLNVGVTVQHDSIE
PGTYSADEIYDFIAREGKDFTNFKANLGWSESTLNKGVLATRGHSQSLNLMATVPGSDLS
FYKIDYTGQTFLPVSDTTSLRLHTKLGYGNSYGSTDGLPFYENYTAGGEGSVRGFESGTL
GPRDTPATGTYASAGQAYYSDRDTESLGGNILITGGVEYLFPLPFIKDNKSLRTSVFWDV
GSVYSDKCYLSTTQGCDGVDLSQMASSVGVGVTWYSPLGPLSANIAFPVRTPDNADTQVF
QFSLGQTF