Protein Info for AO356_00310 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details PF18169: SLATT_6" amino acids 1 to 175 (175 residues), 197.3 bits, see alignment E=8.1e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W278 at UniProt or InterPro

Protein Sequence (206 amino acids)

>AO356_00310 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MDEQVALKLIAEKAYDVGYSAKLHFSTYDIVEKAPGWIGLISLVIGVLALYIDFLAAKHI
SALITVIGICSLYITYYGDTKEQYFQAGNKLTQLLDQLKSMSARCKSNHQFTSADQAELD
QITTDFRSACQRKHILFSGWLAHKKFFWDQQVDWIAEHREFSFFRDKIPFSVYALIVVIL
IAFAGGSWLAAHPDLLLSLKDVCTHE