Protein Info for AO356_00030 in Pseudomonas fluorescens FW300-N2C3

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 PF02311: AraC_binding" amino acids 30 to 83 (54 residues), 26.1 bits, see alignment 9.6e-10 PF12833: HTH_18" amino acids 216 to 294 (79 residues), 90.1 bits, see alignment E=1.4e-29 PF00165: HTH_AraC" amino acids 257 to 294 (38 residues), 30.9 bits, see alignment 3.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a2023)

Predicted SEED Role

"Transcriptional regulator of various polyols utilization, AraC family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XGU5 at UniProt or InterPro

Protein Sequence (316 amino acids)

>AO356_00030 AraC family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MPDNRAALFEHRPADLEVILPEPDQSFRWYEHDYPYALARWNHHPEYEIHLIRQGSGKLL
AGDYIGPFTAGHVALIGPGLPHDWMGDIAPGEQLVGRDVVLQFDGAALLDLQGSLPELSE
LKTLFELAQRGIEFTGGTAAEAALLLERIGEATGLQRLIMFLQLIGTLARAPKREIRVLA
SACYSPSLNERSSERINQAFDYLINELTSDVRLSVIAERVGMSEAGFSRFFKRITGHGFM
DLMRKLRIQRACRLLVQTQLSVAEICFEVGYENVSNFNRHFRHEMHQTPSDYRRTTAVKL
FNRDSLHPSLPITQVR