Protein Info for AO353_29220 in Pseudomonas fluorescens FW300-N2E3

Annotation: clavaminate synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 PF05141: DIT1_PvcA" amino acids 41 to 296 (256 residues), 189.2 bits, see alignment E=1.1e-59 PF02668: TauD" amino acids 344 to 583 (240 residues), 115.5 bits, see alignment E=4.1e-37

Best Hits

KEGG orthology group: None (inferred from 72% identity to pen:PSEEN0964)

Predicted SEED Role

"PvcB protein, related to amino acid oxidizing enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1D0 at UniProt or InterPro

Protein Sequence (586 amino acids)

>AO353_29220 clavaminate synthase (Pseudomonas fluorescens FW300-N2E3)
MEHRDAWIAAVSDLLAGYLLKGTDDCFETQGRAHLARSLGQYFDQNLPVRLVLPGFPCKS
PNASDQTFGVLPDYGEVMAIERLDQLGQAIAALHTPGCVVSILSDGTTFNDIVGVADDVR
AAYNRALRELCTTHTIQWVSMEDLFPQAQSAEAVRASLVKQARLPWKNLGELIEQSRHDE
SLSQAHDNLCSHLYNDLRLCREDGQSEDEYLQQINFKAYQMMFRGQALNAAVDRFFGDDI
RLSVHQYSNAGPKFTVGLAEGLTRVDSPWHAVPVCNIDGSQRLRARAQVDLDHHVLVTWQ
GRPWLYHQTENPQAQGFEYELQKLPLFGLVVRDPLGLGFERLSTSLLEALVETFGFVCLK
GCRFDDQDSFARSCERFGTLYEWAFGAVHVVKPADKPQGVVHSLEKTPLHWDLNMLPDSD
PQVQRNPKFCASKFMLYCKTAPQPGEGQTTIVDSRNVLRKVGQHVARQWQKVNITYYTKM
TYFGGSPRMYSLVDHHPRSGELILRYQEGTDSTLQTLSQSVQDHDEQAQQALLEQVNALV
YDPDCLIAHQWSEGDLVLIDNYRTLHGRLPMSPASSSRELWRVQVY