Protein Info for AO353_29055 in Pseudomonas fluorescens FW300-N2E3

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF20142: Scaffold" amino acids 58 to 184 (127 residues), 73.1 bits, see alignment E=6e-24 PF01471: PG_binding_1" amino acids 213 to 269 (57 residues), 30.7 bits, see alignment 4.2e-11 PF03734: YkuD" amino acids 300 to 459 (160 residues), 73.7 bits, see alignment E=3.8e-24

Best Hits

KEGG orthology group: None (inferred from 70% identity to pfl:PFL_2412)

Predicted SEED Role

"cell wall degradation protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WRX2 at UniProt or InterPro

Protein Sequence (523 amino acids)

>AO353_29055 peptidoglycan-binding protein (Pseudomonas fluorescens FW300-N2E3)
LIKKHACYLSLFLLAAPLVATAQNELADHDSPLKLALTQLPVDCPRLAAHLSASAQTLLQ
AFYQQQDYVLIWTANGRLSALQAQVQQLADDGLDPKRYSLPTSAAEVDAVCADIGISQRY
LQALQDLRYGRLRQSRFEPLWHAQALPYDRPAEVLAIAGPGLQDMATAFQLARPSLEQYQ
SLRRVYARQRQRPLPHWQALASGPLLQPGAQDARVPELAKRLFNEGYLANVSAGVGTVYN
KELVSALKSFQLSHSLQADGVLGEGTLTELNVSPALRREQLRVNLERFRWLAQDLEPNGL
LVNVAAATLTVYQGGTPVWQTRTQVGRAERQTPLLKSSVTRLTLNPTWTVPPTIMREDKL
PEIRRDQAFLGKQNLQVLDSDGHPLAVDEIDWDNPGNILLRQDAGPKNPLGQMAIRFPNP
FAVYLHDTPSQALFQKAPRAFSSGCVRVEQAMQLRDLLLSPAERQRTNELLATGLTHEFR
LATPVPILLSYWTVQADRQGQLLYAPDIYGRDAALSAALGGKS