Protein Info for AO353_28905 in Pseudomonas fluorescens FW300-N2E3

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 PF00665: rve" amino acids 69 to 158 (90 residues), 40.9 bits, see alignment E=1e-14

Best Hits

KEGG orthology group: None (inferred from 63% identity to swi:Swit_3082)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H183 at UniProt or InterPro

Protein Sequence (221 amino acids)

>AO353_28905 transposase (Pseudomonas fluorescens FW300-N2E3)
MQISHETLYRSLFIQARGVLKKELVAVLRSRRMMRRAKTATSKGQPRGHIIDAVSISERP
AEVADRAIPGHWEGDLITGSKNSHIATLVERTTRFLVLVRVEGKDTKSVVDGLIREVQQL
PEQLWRSLTWDRGTELAQHKRFTLDTNINVFFCDPRSPWQRGTNENTNGLLRQYFRNGTD
LSGYSQSDLNVVALQMNQRPRKTLDFETPADRLQRLVAPTG