Protein Info for AO353_28555 in Pseudomonas fluorescens FW300-N2E3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details PF07291: MauE" amino acids 24 to 105 (82 residues), 29.2 bits, see alignment E=1.6e-10 PF07681: DoxX" amino acids 26 to 106 (81 residues), 69.5 bits, see alignment E=4.7e-23 PF02077: SURF4" amino acids 69 to 145 (77 residues), 33 bits, see alignment E=7.7e-12

Best Hits

KEGG orthology group: None (inferred from 78% identity to pfl:PFL_2372)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W0K6 at UniProt or InterPro

Protein Sequence (146 amino acids)

>AO353_28555 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MSQSAATTSKDTHELSSAVATTATAALVGRVFLSAIFILSGISKLSAPAMMIGYIGSVGL
PFPQLALALAIIIEIGGGIALIAGYRTRAVALVLALFSVITALAFHNSLGDQNQFIHFFK
NIAMAGGLLQVVAFGAGRFSLDARRR