Protein Info for AO353_28255 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 PF00005: ABC_tran" amino acids 24 to 183 (160 residues), 80.2 bits, see alignment E=9.5e-26 amino acids 300 to 451 (152 residues), 103.2 bits, see alignment E=7.9e-33 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 503 to 591 (89 residues), 46.1 bits, see alignment E=6e-16 PF08352: oligo_HPY" amino acids 505 to 570 (66 residues), 38.9 bits, see alignment E=3.6e-13

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a3501)

Predicted SEED Role

"ATPase components of various ABC-type transport systems, contain duplicated ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X289 at UniProt or InterPro

Protein Sequence (613 amino acids)

>AO353_28255 ABC transporter (Pseudomonas fluorescens FW300-N2E3)
MSELIRVQDLRVVACGERGEVEIVKGVSFSLEKGEVLALIGESGSGKTTIALALLGYARR
GCRLAGGVVQVGEHDMLALSERELQGLRGNRVSYIAQSAAAAFNPAKKLIDQVVEGALIH
GLGNRTVLEAKAIELFRDLALPDPEHIGQRYPHQVSGGQLQRVMAAMALISDPLLVVLDE
PTTALDVTTQIDVLRAFKRVVRERGATAVYVSHDLAVVAQMADQIVVLNGGQIFEQSATA
PLLKGPAHEYTRSLLAAARPDTTIRPPCGVAEDQPLLTIKGLTAGYGNKNTQGMPSIRVL
EDIDLTVRRGQAIGVIGESGSGKSTLARVVAGLLTPALGGLTFDGQPLGGSLSERTDEQF
RRIQMVFQNADTALNPMHSISTILSRPLKMYFGLKGAALRERIGELLDLVRLPRSLAERR
PNELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVGAAILELLRDLRQELGVSYLFI
SHDISTVRALCDDIVVMYSGYKVQEGSRQSFAQAPFHPYTDLLIHSVPELRQGWLENCGT
TCGTLPPIGAKANVPELCTFLNRCPVRVDGLCNRTAPNRRTLVGGSEILCHHDSAELLKT
QQDLNSMIQGAYA