Protein Info for AO353_28140 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 transmembrane" amino acids 25 to 48 (24 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 18 to 124 (107 residues), 61.2 bits, see alignment E=5.5e-21 PF00528: BPD_transp_1" amino acids 37 to 231 (195 residues), 90.2 bits, see alignment E=7.3e-30

Best Hits

Swiss-Prot: 37% identical to HISQ_ECOLI: Histidine transport system permease protein HisQ (hisQ) from Escherichia coli (strain K12)

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 61% identity to pfl:PFL_5022)

Predicted SEED Role

"Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)" in subsystem Arginine and Ornithine Degradation (TC 3.A.1.3.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WRJ1 at UniProt or InterPro

Protein Sequence (237 amino acids)

>AO353_28140 ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MPAMFELIDFSEQGWGSALLKGLWMTLQISAGAFVVGLFIGLVVACLKLNAPKPIAALMR
GYTTLFRAVPELLLILLLYYVGSMLLNSLMARMGYGAMDVSGPLAAILVLGLVQGAYASE
IFRAAIQAIPFGQIEAARAFGQSGFGLFRRVTLPIMAPYAMAGMANLWINLIKDSALISV
VGTNELLYTAKQGAGSTRHYLLFYLTAAAMYYVVTLVSNYLSGRLERRTRRWMPLAE