Protein Info for AO353_28005 in Pseudomonas fluorescens FW300-N2E3

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 103 to 119 (17 residues), see Phobius details amino acids 131 to 155 (25 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details PF03591: AzlC" amino acids 20 to 158 (139 residues), 126.8 bits, see alignment E=4.3e-41

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_3299)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X258 at UniProt or InterPro

Protein Sequence (232 amino acids)

>AO353_28005 branched-chain amino acid ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MSDNLLPRSAFLRGAAAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQL
VAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSMRPVVSPLPGRWRVGLGFLLTDELFALT
SQFDQRQFNRWYALGVGLTFYVAWNLFTLAGIVLGSSIPGLERLGLDFSIAATFIALITP
VVRNVPTVVCVAVSLFCSVLFNYWHLGSALVLAGLLGMSAGFVCNKFYGART