Protein Info for AO353_27930 in Pseudomonas fluorescens FW300-N2E3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00126: HTH_1" amino acids 4 to 62 (59 residues), 73.2 bits, see alignment E=1.4e-24 PF03466: LysR_substrate" amino acids 89 to 292 (204 residues), 170 bits, see alignment E=4.8e-54

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a1907)

Predicted SEED Role

"LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W0B1 at UniProt or InterPro

Protein Sequence (294 amino acids)

>AO353_27930 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MTVKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEDGLGGRLFSRTTRNVALTPE
GESLLPLARRLIADWDNAEDEMRQRFTLQRGRVTLAAMPSFAGNLLPPILKTFRARYPKV
NVTVNDVINEQVLEMVRDRHVELGVAFEPTQSSSLEFTPLYMDRFVAVVPSDSPLAERAE
IDWKTLLEQPFITLQRPSTVRVMLEEHLQARQMKLPVEFESHQLATVGRMVASGLGVSAV
PALCVEQMRELGACCITLSDPVIERAIGVLTKPGHELSAAAQALFDILKDEVRL