Protein Info for AO353_27590 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 126 to 154 (29 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details PF06912: DUF1275" amino acids 29 to 216 (188 residues), 114.4 bits, see alignment E=3.1e-37

Best Hits

KEGG orthology group: None (inferred from 78% identity to pfo:Pfl01_3574)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W0M1 at UniProt or InterPro

Protein Sequence (234 amino acids)

>AO353_27590 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MLPSSPNRAHTPGLLHVQKWRGRIGMLLVASLSVLAGMTDAIGFMATGDFVSFMSGNTTR
LAVAISGADLGMTLRLLVLVAMFVVGNALGIVVSRFSGRRALPLMLCVAALLCGAAAWPF
EAKLPALLAAIIAMGMLNAAVEQVNGFPVGLTYVTGALSRFGRGLGRWLLGERRNGWRVQ
LIPWTGMFAGAVLGAALEHHLGLQALYASGLLAGVLGAVSLKIPRRWQMGYMPR