Protein Info for AO353_27470 in Pseudomonas fluorescens FW300-N2E3

Annotation: sodium:proton antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF11769: DUF3313" amino acids 30 to 219 (190 residues), 153.8 bits, see alignment E=2.5e-49

Best Hits

Swiss-Prot: 41% identical to YDCL_ECOLI: Uncharacterized lipoprotein YdcL (ydcL) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 47% identity to spe:Spro_4813)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W0K5 at UniProt or InterPro

Protein Sequence (224 amino acids)

>AO353_27470 sodium:proton antiporter (Pseudomonas fluorescens FW300-N2E3)
MDLSRNLLIGVALTGLLLGGCTSKVIQKEQYSGFLPNYSNLQEVTTPSGEKAMRWVTPSW
NPNAYNTVAFKQLELYPAPKPNERVNRQTLDQLQTYMTDSAKSTLSQKYRVVPNVQSAPA
GSRVLIVRAAITGVTASNEGMKWYEVVPVAAAIGATQAATGHRDQDTELYIEAEMVDASN
GQTVAKVARKVFGEQLENTSQQVTANDFKAALKKLTSDMQAFLR