Protein Info for AO353_27360 in Pseudomonas fluorescens FW300-N2E3

Annotation: portal protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 transmembrane" amino acids 291 to 302 (12 residues), see Phobius details TIGR01539: phage portal protein, lambda family" amino acids 50 to 516 (467 residues), 242.9 bits, see alignment E=2.6e-76 PF05136: Phage_portal_2" amino acids 50 to 413 (364 residues), 343.3 bits, see alignment E=9e-107

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WIK4 at UniProt or InterPro

Protein Sequence (536 amino acids)

>AO353_27360 portal protein (Pseudomonas fluorescens FW300-N2E3)
MGFFRKDPAELLMREAIRLAKSASGARPIVAQGGGGGVETRWRGASRVLRSMASWIPGLG
SPRRDLDQNERRMLVARSRDAMRNHLIARAAITRLRTNVVGTGLVCRSQIDHDALGLSEQ
QADELNTQLDRLWSLYADDPRECDAEATLNHYQLQALVMISSMVCGDVLIASPDDERPGC
VFSTRLQLIESDRVCNPAGQLDGTNLVDGVEFDRLGAPLAYHVCTGYPNEFTAGQSLRWE
RLPAFGEATGRRRVMHVMADKERPGQKRGAPYLAPVLEPLQKLERYSSAELMAAVISAMF
TVFIKKTNDFQVSNLPLTALANEGDGAGGDTTADGELALGEGAIVDLGQGEEPVIANPAR
PNAQFDPFFTSVVKEIGAALEQPMEELLLHYSSSYSAARAAMLQAWRFYSLRRWWLICDF
CQPSRELLIDEAVARGLIKLPGYAEPAKRKAYCQAIWIGPARGAIDELKEANAAGKRIEI
GVSNETLETAAMTGEPWQQVYRQRVREVEQRRTDGLHVLPKGREQETPPPNNPNEE