Protein Info for AO353_27295 in Pseudomonas fluorescens FW300-N2E3

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 356 to 377 (22 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 460 to 481 (22 residues), see Phobius details PF12571: DUF3751" amino acids 6 to 152 (147 residues), 178.9 bits, see alignment E=3.2e-57

Best Hits

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VUZ3 at UniProt or InterPro

Protein Sequence (510 amino acids)

>AO353_27295 phage tail protein (Pseudomonas fluorescens FW300-N2E3)
MIDQNSQFFAILTNVGMAKQANADALGIPWKFTEMGVGDANNTDPIPSAAQTKLINEWRR
RPLNQVRVDPINPAVIIAEQIIPADEGGHWIREIGLYDADGDLVAVANCAPSFKPVLSQG
SGRTQVVRMNFIVSSTGNITLKIDPSVVLATREFVEMRIMEELYKLDIKQSVRVATTANI
ALAGLLTIDGVVLAAGDRVLVKNQAVAKDNGLYIAAAGVWARAADADSNAEVTSALLVSV
EQGTTLADTRWQLVTDGVIVLGTTPLTFQNVTQGFAPINSPALINPTANTPPQFNSSQLL
ATTEFVQRALGSLSGFSPFPASRSLTVADIGKAIWPSAASLTLTLPTPASLGVPNGVAVL
IFTTSVGVTLAAGAGASINSPLGSALSTFAVKLGQSLILIAAGVGTWQIVNSTADLGSNA
DFASVLGVSAASQQLPGLSIKVGNINNVSTAASLPLTFPVSFPVACIALILTGWSGTAAA
YTHIGRDKSGATLQRGSNTNYLLDYIAIGF