Protein Info for AO353_27270 in Pseudomonas fluorescens FW300-N2E3

Annotation: tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 949 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 497 to 516 (20 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 133 to 513 (381 residues), 38.1 bits, see alignment E=4.7e-14 PF10145: PhageMin_Tail" amino acids 172 to 373 (202 residues), 85 bits, see alignment E=3.4e-28

Best Hits

KEGG orthology group: None (inferred from 62% identity to pst:PSPTO_3393)

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WPC4 at UniProt or InterPro

Protein Sequence (949 amino acids)

>AO353_27270 tail tape measure protein (Pseudomonas fluorescens FW300-N2E3)
MANKLALGLVIGGAVSSTVGAAFKDVTGRIKRLEDEGKKARVLQRAIGDTIRLRDEWKKA
HDSGSAGASKLLGRLNSNLDSLKRQGVEVGRLEKAYRSMGQAANKAEFKAKGHQQLDAGK
AGMKSAVGAAVVGVGALVVPTKVSADFGAIVRDIAIKAGVANKPQEQEMSRKIIDTSRDT
GMARNDVADVVNQLVGAGMELSKALEYAPVAAKFVVGQGSSGVDTAKMINALGQNAKITD
AKQMQQALEAIAYQGQAGSFEAADMAKWFPELLANMGSIGITGMDAVTQLGAMLQVQMKT
AGSSDEAANNLKNWMGKIGATDTVQAYKKAGIDYKGSMQTGLQNGMSTLETSMALAQKYI
QATDPKRAAAMAEATSKISKEADPEKAKAMMASLEESLKTGDLFADMQVKAALSAYMQNK
ALYSQLKNDSRAATGILDKNLSERRESSSQKWAEMAQSMDDAMRSVGDALRPVTDTVAET
LTKVTKSITALSDSSPGVVTGIVAVGGGLITLKGLFSSFKMGKGLFNLARGSLGGGKAGE
VQKVFVTNAKDGDGKDAEPKGKAGKALSLVETGLKAVAALKGKPADGDAEAEGEDDKKAG
KFDLVSTGLKVVSLAKEATSGGGEDGEAGSGDDGVKKVFVVNAGAMGSAAEGPGETCRRG
RGARRNPSRRRSRPPVPRPPVPVPRPPIPPVPVPSGAMARLGGVVQAVGKIGKAAKMIPG
GSLMDAGAMAFETYQTAKTQDEKAEGYGAAAGNLAGTMAGAAAGAAIGSVVPIIGTAIGG
LVGAYLGSQGGEALGGSLGKSLFGGKDDKPEEKPAAPITPLLMAPRPGPAVPSLAALTQP
LNGANGSGALLMAQATAPQGPVLGDVARSLAVQAPAKPAAVVIQPKEPEKPVPAKVDQQF
QYSLSMPVTVQGDVKDPQRLAQDLMPHMQRMMADAAKQNAAKLYDEPHV