Protein Info for AO353_26855 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 758 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF03212: Pertactin" amino acids 342 to 451 (110 residues), 110.1 bits, see alignment E=6.7e-36 TIGR01414: outer membrane autotransporter barrel domain" amino acids 352 to 758 (407 residues), 312.2 bits, see alignment E=3.3e-97 PF03797: Autotransporter" amino acids 499 to 736 (238 residues), 164.4 bits, see alignment E=4.6e-52

Best Hits

KEGG orthology group: None (inferred from 44% identity to pfs:PFLU1444)

Predicted SEED Role

"Outer membrane autotransporter barrel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1Z3 at UniProt or InterPro

Protein Sequence (758 amino acids)

>AO353_26855 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MSSLVLMSMIAPDASAQRLDGTSLTISAPGVTRDWQLYSGAKLTVDGMSTFAIDAIRSTL
NVNAGTTQQISARQGSTVNLVNTTVNAADGNTAIVLVDSVAIITDSTINSNQLGMRIARN
AGGDIGSTATVSGSTITGVTGGAWVTGLSALNLSNSTLQGTGTTSYGLRLTNGSVTASNG
SHIIGGQNGLILGLDPNVVSQPNTVVLNKSSVVGGSGSAILVDYASKDSTPTQIDILNGS
TLNGGNGIILDVTGKALVNMNVGNSALNGNAQVAGNSIANLTFKQGSLTGDVIAESGSTA
NVQLQQGSLLTGRLENVATVGIDRQSEWTMTGNSQVGDLHTEGTVRFGADHGNDYKQLDV
TNLSGDGLFLMRTHFTTGETDLLNVTGTATGDHRLLITSSGVDPASGEPITVVHTQGGDA
QFKLANADGTVDLGTYSYGLTQDTTGKNWFLDPSKLTVSPSTQVVSALFGAPLTVLYGED
ASLRTRMGEVRFNPGKSGAWSRAFGSKYNVNGDYGNSFQQTQKGFALGVDTPLGDSRWML
GVMAGYSQSDLALNHGSSATVDSYFLGSYLTWLGEQGYYIDSTLKLNRLESKADVAMSDG
EKSKGDYGNTAVSASVEAGRKIELRNGYFIEPSTRWSTAYIQGKNYGLDNGMEVEGDGTY
SLLGKVGVTAGRDLQMKNGSALQPYVRATLAHEFSASNEFKVNDTRFKHKLSGSRLEVAT
GVAVKLTDRWSAHAEFEYMNGKNIEMPIGGTLGVQFKF