Protein Info for AO353_26795 in Pseudomonas fluorescens FW300-N2E3

Annotation: NAD-dependent deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 216 to 235 (20 residues), see Phobius details PF02146: SIR2" amino acids 27 to 227 (201 residues), 147.5 bits, see alignment E=2.1e-47

Best Hits

Swiss-Prot: 71% identical to NPD3_PSESM: NAD-dependent protein deacetylase 3 (cobB3) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: K01463, [EC: 3.5.1.-] (inferred from 82% identity to pfo:Pfl01_2078)

Predicted SEED Role

"NAD-dependent protein deacetylase of SIR2 family" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate or Redox-dependent regulation of nucleus processes

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.-

Use Curated BLAST to search for 3.5.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WMB7 at UniProt or InterPro

Protein Sequence (287 amino acids)

>AO353_26795 NAD-dependent deacetylase (Pseudomonas fluorescens FW300-N2E3)
MFESPIREQLDYLQNLMAEQPLLVLTGAGISTASGIPDYRDTDGVRRGRQPMMYQEFLKA
PESRQRYWARAMLGWPRVRQARPNTAHKALATLQAQRQIAGLITQNVDTLHDQAGSPDVI
ELHGSLHRVLCLDCGQRSDRDSIQRLMEAQNPYLAGVDAVQAPDGDTLLDPAFESHFQVP
RCPNCEGERMKPDVVFFGENVAHATAAKAMAAAEQAAGLLVVGSSLMAFSAFRLCRVIAD
RGKPLIAINLGKTRADALLDMKIEASCEQLLPLLAERLSRLRPFLPV