Protein Info for AO353_26595 in Pseudomonas fluorescens FW300-N2E3

Annotation: copper resistance protein CopD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details PF05425: CopD" amino acids 187 to 282 (96 residues), 52.2 bits, see alignment E=3.5e-18

Best Hits

KEGG orthology group: K07245, putative copper resistance protein D (inferred from 73% identity to pfo:Pfl01_3447)

Predicted SEED Role

"Copper resistance protein D" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WI75 at UniProt or InterPro

Protein Sequence (292 amino acids)

>AO353_26595 copper resistance protein CopD (Pseudomonas fluorescens FW300-N2E3)
MSSALVLGRFLHFTVVLMLFGACLFRPLLLRHEPLTQALATLDQRLAGLSRLLAGFALFS
GVCWLLLITASMAGSLSAAFDWPTVQLVLSNTFFGQVWRWHLLFNGLLVVCLLSPLSNSF
ALRMLLSSLLLMTLAPVGHGAMLDGLNGQLLILNQVIHLTCVGAWLGGLMLLMMILRRPT
THAVEPILQRFSGIGYGLVAGLLVTGLINVRVLTGAFWPTPLLSGFALILLIKVLLVSAM
LGLALFNRLRIKHCEQRLSTLRTSVMLEWLLGIAAVAAVSLLGTLPPMVAGN