Protein Info for AO353_26185 in Pseudomonas fluorescens FW300-N2E3

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1085 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 281 to 294 (14 residues), see Phobius details PF06791: TMP_2" amino acids 269 to 415 (147 residues), 142.3 bits, see alignment E=1.8e-45 TIGR01541: phage tail tape measure protein, lambda family" amino acids 701 to 1017 (317 residues), 131.6 bits, see alignment E=1.9e-42 PF09718: Tape_meas_lam_C" amino acids 838 to 912 (75 residues), 101.2 bits, see alignment 2.6e-33

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X1D5 at UniProt or InterPro

Protein Sequence (1085 amino acids)

>AO353_26185 phage tail protein (Pseudomonas fluorescens FW300-N2E3)
MSTTFASLGIAVESSQAVKAADDLDKLVDAAEDAGKAIDDLGKTGDGLANTGKKIVQTET
EVVQGIDKTTGARERQAGATRKATESATSEIAIISRLDKAMTGNLDSIEQLIQAEGLLER
ARKGGLVTIEEQARYQDQLGKAYDKIEKAEAKETAQKQRLIDAENRQIEALKRTVNSIDP
VTAKLAKLEAQEKALEAAHKAGVVDANRYNEALAKIGKDRSSLTATETAFDKLKLGTRQA
QENVVQLGNALSSGDWGSGVRAVAQLGAGAGASAAGLLATLAPLALATAAVGGLGYAYYK
GSEEQDAFNKSLILTGGSAGFTSSQLGVMARQVSDTVGTTGQAAEVLATLAGNGKIAGES
FLGITQAAVSMQEATGKAVGETIAEFVKLSDEPVKASAALNAEYHYLTASVYSQIVALEE
QGKHAEAVKLATNQYADAINDRTPKILENLSLWEKGYNLVAKAADGLKNAGRAQTNAERI
QTAKEALERLETRGGSERIPGEDPVYIGEKGKQSLKDYIKGLEVKDAAETDYAKKLKERD
DAELAGQKAIDKLDARKKSNRSNADKRKDELEDLEREIAALRKSDPANSRLTQASIDLQK
SAINDKYKDPKSASGAVDLTGFNNSKNALAETLSYYKNAEKELEASQRAGVISQASYTEQ
RVSLIKQQAVEVEQSYQAEIAALEATKGKSSTTAAQRIQLDQKIADARTAMVKAQKDADS
QLEVLATNETGRLAKQERAITSYAQALSQQQKALELAGRRAVIGVGQGDRQNALSGELNS
QQDRFAQQSLELENQRSDPSRNMSDEEFTRKSQALADANKAATDQIRQNYVDVEAAQGDW
TKGATSAWANYLDSAQNVAGQTKSLFGNAFSSMEDAVVNFAMTGKLSFADFTKSILADMA
RIATRQASSALLSSLVGAGISYFTGSGTGATGAATAGGAEAGAQSFGSQFDASSASVTFG
GGRASGGGVDPNTLYEVNEKGPELFSQGGRSYLMTGAQGGSVTPLTTGGRPGIAAMGGGN
GGNTYNFPVAVSVQTSGEAGGTASQEASNQFGKGIQQAAKVEAETAIARALQPGGSIWRL
TNGRG