Protein Info for AO353_26135 in Pseudomonas fluorescens FW300-N2E3

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 60% identity to shw:Sputw3181_2457)

Predicted SEED Role

"Phage tail assembly protein I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0X7 at UniProt or InterPro

Protein Sequence (202 amino acids)

>AO353_26135 phage tail protein (Pseudomonas fluorescens FW300-N2E3)
MCPAITYTPTTKVMLSGSLAKKFFRSKPYLLDGGSAVEVFRALNATIEGFSEEIKRLERL
GLKFAIFRNRKNVGMDGFDLGGTREIRIVPVIGGSKRAGGLQTIIGTVMIVAAYVLSFTP
FAAASPFLYAAGTASIAGGVIQMLSPQQGGLSQSSSPENAPSYAFGSAKNTTASGNPVPI
CIGDRRWGGMIISASIYAEDKT