Protein Info for AO353_26130 in Pseudomonas fluorescens FW300-N2E3

Annotation: host specificity protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1185 PF13550: Phage-tail_3" amino acids 344 to 506 (163 residues), 65.4 bits, see alignment E=6e-22 PF09327: DUF1983" amino acids 1029 to 1109 (81 residues), 80.2 bits, see alignment 1e-26

Best Hits

KEGG orthology group: None (inferred from 77% identity to pba:PSEBR_a3799)

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WQQ7 at UniProt or InterPro

Protein Sequence (1185 amino acids)

>AO353_26130 host specificity protein (Pseudomonas fluorescens FW300-N2E3)
MGAAQKIDIYGEKGGSSKPKSPVEASDSLRSTNLAKMLIAVGEGEFDEVPTDYSIFLDNT
PIRDASGNYNFPNVKWDWRSGSVDQSYIPGIPAVENETSLNVELRSDSPWVRSITNTQLS
AIRMRFAWPALQRQDDEGNVVGYRIDYAIDLATDGGAYQQVYPGAVDGKTTTRYERSVRV
DLPDATSGWLIRVRRLTPNQNSNKIADTMLIAGITEVIDAKLRYPNTALLYIEFDAEQFT
NIPAVTVRCRARKWQVPSNYDPMSRTYTGTWDGTMKQAWTNNPAWITYGICTEDRFGLGK
RIKSFMVDKWELYRIAQYCDQLVPNGLGGTEPRFLCDMNLQGKADAWSLLRDIAGIYRGM
TYWAQGQLVMQADMPRAQDFDYVFTRANVIDGKFSYGSASAKTRYTRALVSYDNPANNYD
TDVIPFADLALQRRMGDKPTELSAIGCTRASEAQRRGKWAILSNNQDRTVSFKAGMEGVI
PLPGHIIPVADSLLAGREVGGRISAVAGRVVTLDRDTQARAGDRLIINLPGGRAEGRTVQ
SVNGRAVTVTVAYSEPPIAQLQWALDADDLAIPLYRVLRTRRTTEGDFEISALQYEPSKF
AYIDTGARLEERPISVIPITVVPAPASVTVTSSSVVSQGIAVATMTITWPAVNGAVGYDV
EWRKDSGNWIKLQRTGMTSVDVVGIYAGAYLARVRAVSAFDISSSWRAAMLTQLKGKEGL
PLAVSYLNATSQLFGIGLKWGFPAGAEDTQRTEIWYGPSTSLELATKLADLAYPQSDYTM
QELKAGATLFFWARLVDRTGNIGPWYPVGTGVMGQASSDAGPILDMLAGKISKTELGEDL
LGEIEKIPGLQDQLDALDESYDPAKTYIKNAIVRSGQLLYQAKGPVPINTPPPNATYWLD
VGQSVETANGLAQQVAFNTADITELDGVVTAQATAFQALRASSRDDGGEGDLAGAIDGWN
GTAAIASERSVRASETEAIGRELVTFDAKIGANAANITELTEVVATNDSASTKKIDQLNV
SVGQNTAAVQQTSSALADTNGKLATLWSVKMETTAGGQKYAASFGLGLQVDPSGVSSQFV
VRADTFMLLNLANGTPVSPFAVTDGQTFIRDAFIQDGTITNAKIGSYISSTNYIPGQQGW
ILNKDGTFEINGSVPGQGRSIQTHRSLRFWDNNNMKRLQLGDLTE