Protein Info for AO353_25730 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 139 (29 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 218 to 245 (28 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 341 to 363 (23 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 286 (265 residues), 66.2 bits, see alignment E=1.3e-22

Best Hits

Swiss-Prot: 52% identical to Y3873_PSEAB: Uncharacterized MFS-type transporter PA14_38730 (PA14_38730) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 87% identity to pba:PSEBR_a3101)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WPF4 at UniProt or InterPro

Protein Sequence (398 amino acids)

>AO353_25730 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MSVQQTPPVSSTAITLQIVSIVFYAFVAFLCIGLPIAVLPGYVHEQLGFSAVVAGLTIGS
QYLATLFSRPMAGRMSDSIGSKQAIMYGLLGIMLSGVLTLLSTLLQNLPLLSLMILIGGR
LLLGIAQGLIAVGTVSWCMGQVGTEHTSRSISWNGIASYAAIAVGAPLGVVMVGEWGFAS
LGIALSALALAALLLIRNKPSVPVIRGERLPFWAVFGRIAPFGASLSLASIGYGTLTTFI
TLFYISRGWTGAAWCLTVFGICFILSRLLFISSINRFGGFNSAIACMSIETLGLGLLWLA
PSTAVALMGAGLTGFGLSLVYPALGVEAIKQVPSSSRGAGLSAYAVFFDLALAIAGPLMG
AVALNLGYSWIFFCAALLSTTGLGLTLLLKRRSALSPS