Protein Info for AO353_25625 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 98 to 128 (31 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details PF04982: TM_HPP" amino acids 12 to 166 (155 residues), 125.8 bits, see alignment E=5.8e-41

Best Hits

KEGG orthology group: K07168, CBS domain-containing membrane protein (inferred from 81% identity to pfl:PFL_3053)

Predicted SEED Role

"CBS domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNJ9 at UniProt or InterPro

Protein Sequence (235 amino acids)

>AO353_25625 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MLARWIPAAVNTRPSEWSRAAIGMSLGTLLSVWLCGQVFGMDVALHLIGPLGASAVLLFA
VSSGALAQPWSILGGYLCAAVVSLLVAHVLGRTLGSACLAAGMALILMCWLRCLHPPAGA
LALLLVVADPATIAMEWRELGPVMLAATCMLLSALAYNNLTRIRYPKGHSEPVATVPADH
PPADALAITAEDLKLALADMQEFFDVTPEDLEQLIHASELHAKRRSISEVFGTRP