Protein Info for AO353_25430 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 260 (173 residues), 40.1 bits, see alignment E=1.7e-14

Best Hits

Swiss-Prot: 41% identical to POTC_HAEIN: Spermidine/putrescine transport system permease protein PotC (potC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 95% identity to pfl:PFL_5176)

MetaCyc: 40% identical to putrescine ABC transporter membrane subunit PotI (Escherichia coli K-12 substr. MG1655)
ABC-25-RXN [EC: 7.6.2.11, 7.6.2.16]

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.11 or 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VZ88 at UniProt or InterPro

Protein Sequence (268 amino acids)

>AO353_25430 ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MQRLFKRTGLSVQDFPGFGGFSFLFYLYLYAPIVVLVVFSFNANQSATVWTGLSLDWYRA
AFANQALRQAAGNSLLIAVCASMIATAIATLAALGTSRGAKFKGMQLSMGAIMLPLVLPE
IVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLNDMDLSLEQASADLYAG
PWRTFRKVTLPLLMPGIVSGLMLAFIVSLDNFVISMMVAQAGTTTLPIFIFGLLRMGVTP
DVNAVSTLILGVSVLFVSLSYLLGKKKT