Protein Info for AO353_25350 in Pseudomonas fluorescens FW300-N2E3

Annotation: peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details TIGR01413: Dyp-type peroxidase family" amino acids 15 to 311 (297 residues), 286.9 bits, see alignment E=1.1e-89 PF04261: Dyp_perox_N" amino acids 15 to 145 (131 residues), 114.2 bits, see alignment E=5.3e-37 PF20628: Dyp_perox_C" amino acids 149 to 311 (163 residues), 196.4 bits, see alignment E=3.1e-62

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 81% identity to pfl:PFL_3734)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WHL4 at UniProt or InterPro

Protein Sequence (321 amino acids)

>AO353_25350 peroxidase (Pseudomonas fluorescens FW300-N2E3)
MTKLMPMDNKTPDPQSVCSPITSSAIFIVATLAPGNESAAKVRAWCADVAALTRSVGKRV
PSGNLSCVCGIGSSAWDTLFGSPRPASLHPFREFGVEGRRAVATPGDILLHIRADQMDLC
FELATQLLSALGDAVSVVDEVQGFRYFDMRSMVGFVDGTENPVGRHAVDFTIIGDEDPSY
SGGSYVLVQKYLHKMSAWNELSVEAQERIIGRKKLSDIELDDSVKPSCSHSSLTTITKDG
QEVKILRDNMPFGRPGAGEFGTYFIGYARSPEPIEQMLENMFVGRPAGNYDRLLDFSTAV
TGGLFFVPSADLLEELADREP