Protein Info for AO353_24930 in Pseudomonas fluorescens FW300-N2E3

Annotation: Fe-S cluster assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF19295: SufBD_N" amino acids 8 to 166 (159 residues), 63.2 bits, see alignment E=2.6e-21 TIGR01981: FeS assembly protein SufD" amino acids 145 to 420 (276 residues), 273.4 bits, see alignment E=9.9e-86 PF01458: SUFBD" amino acids 180 to 404 (225 residues), 246.2 bits, see alignment E=3.1e-77

Best Hits

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 47% identity to mxa:MXAN_1155)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNA3 at UniProt or InterPro

Protein Sequence (436 amino acids)

>AO353_24930 Fe-S cluster assembly protein SufD (Pseudomonas fluorescens FW300-N2E3)
MNSAALLSQLNPSVDARRPAWLQALRREAFQWVTEQGFPTVKDEAWKHTRVAPILEIPFQ
PVETIASQDLSAVDIERLAGNYGGVRLVFVNGYFADELSALEGLPRGVKVCPFAPLLNAD
NGGLENLFAHAFRSQPQAFTALNAAFAEDGALVQIPAHTTLDVPIHLVFLSTSDATPRVT
HPRVLVQMGAGSRAILVQSHVSSGEEVYLSNAVSEVLLDADATLEHYTLQNESTAAFHVA
LLSVRQAQGSHFTAHSLALGSKLARQELRVVLEGPGAEVALNGLYLPRGQQHLDNQTTIE
HRAPRCTSRERYKGVIDDHGHGIFDGRIIVRPGAMKTDASQTNKNLLLSTSAQVNSQPRL
EIFADDVKCAHGAAVGQLDEQAIFYLRSRGIPLAAARSLLTFAFVSEMLELIELEPLREH
VQRLVTAQLRGLEVSA