Protein Info for AO353_24575 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 882 PF00580: UvrD-helicase" amino acids 171 to 308 (138 residues), 36.6 bits, see alignment E=6.4e-13 amino acids 570 to 643 (74 residues), 38.4 bits, see alignment E=1.8e-13 PF13361: UvrD_C" amino acids 737 to 822 (86 residues), 30.4 bits, see alignment E=4.3e-11

Best Hits

Predicted SEED Role

"UvrD/REP helicase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0U1 at UniProt or InterPro

Protein Sequence (882 amino acids)

>AO353_24575 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
VEAPKPESQLDERDELSFPFPQSFLHRLIGKAFDAVGLQQASAWRAGRAAGHDVGFQKGV
GVGHASGLLAGNKTGHSRGYDEGHASGHEAGRTTGYEEGHAAGFEVGHKKGFEEGKLIIE
VQPGPVPAIGAPGIREDVLFKDWRFPITDELEAQIRSDLAERLPNQPPSVDQWKMILSRT
PTTSVVAGAGSGKSTTMVLRLLVLRHYLGIDFKNLTVVTFTVESKMDFAKKVREVFKLWG
YDISHDDSLQIVRTFHSRILSFARCLPGMSNVQPFEFLEKDGSTKEKGSMFQVKMGEPQL
ALMNDCYMRLYDKNPEFKALIGKLYRHSLAMEKMNADSPDALKAQRQARDLAKVDEDICD
TLEKLWSAAGKWPVEGIELSRKVVQLLGQDFHVNGFVPELDAFVILGVDKSEPSDLKAKE
GRFPYLTADVKNKRILFQAHCSRPVIYLKSYVESDQPIEAIRSLVNTCPKFTYKLEGDIA
PQYITEAFFSAASYMENLGLDVFEAIRAMRLSKADVDRDFFHALAIYWNDFTRMLFNMTP
PVMTFNTMFAIFSERKPHNLRALTPGVLRPMTTLLVDEFQDVGANTISWIRATFAEIERR
NLSVPTHGRPAYASLMAVGDDWQSIYGWRGSSPHYLIDFDKVFESPEPNQVLMQENHRSH
QMVIDAAEEIVKRTPGGVPGKRGIAKNEAVAGHQVPVQVRDMDWKQIAVDVERHYDAGDS
ILVLTRSNSVKEDAREELEELLDRARFEKRSSQIKFLTYHSAKGLQAKAVFLLGDCDLKT
SSPSKNDLYAQAGLNRPGDPCGYDTSQSEEALRTAYVAITRAITYCYWYLDKDETRPAIE
KASRHIKAAQPYWNVVNAATPSTANVTNVKKTPAKQSNRRIH