Protein Info for AO353_24485 in Pseudomonas fluorescens FW300-N2E3

Annotation: regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 PF00072: Response_reg" amino acids 11 to 121 (111 residues), 94.4 bits, see alignment E=7.6e-31 PF08281: Sigma70_r4_2" amino acids 144 to 190 (47 residues), 33.8 bits, see alignment 3.2e-12 PF00196: GerE" amino acids 148 to 202 (55 residues), 58.4 bits, see alignment E=6.4e-20

Best Hits

Swiss-Prot: 35% identical to UVRY_SHIFL: Response regulator UvrY (uvrY) from Shigella flexneri

KEGG orthology group: None (inferred from 76% identity to pba:PSEBR_a2760)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNS7 at UniProt or InterPro

Protein Sequence (210 amino acids)

>AO353_24485 regulator (Pseudomonas fluorescens FW300-N2E3)
MNLPTQIRLALVDDHTLVRDGIRALLSVIPTVTVVGEAENGADAMVMVEHCNPDLLLVDI
NLPDINGLELTRKIRDRFPTLKVLVLSMYDSKEYVSESLRYGASGYVLKNAPSREIVAAI
EAIKNGGTFYSAEIAQKLLLDDGIINELTPRESQVLYKMTQGLNNKEMARELNISVRTVE
THRFSIRRKLNIDKPAALVKYAIDHGIIPR