Protein Info for AO353_24290 in Pseudomonas fluorescens FW300-N2E3

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF12833: HTH_18" amino acids 197 to 272 (76 residues), 58.4 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 41% identity to yen:YE2527)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VYQ5 at UniProt or InterPro

Protein Sequence (279 amino acids)

>AO353_24290 AraC family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MSMTYAYDSYRTLHIITRPGVGTAGVVLQQQNLEFKRLYIESPVLIYVEKGMKAVRWPGG
EYLIRAGEAIVVAGGQSLDITNKLAEDGSYRAHWLAWDETLIALYAESNPDLPVIKHALP
ISSDTADFAVSLHRSIKAVEDSTVPTMIARHRLQELLVWIGINGGRLEQSRVLTMAVKVR
RLIGRDLANEWSAGAVASAFAMSEATMRRRLAEEGTNLSNLLIDARMSFALQLLQSTTQP
VMQIALSVGYQTPSQFAVRFRRRFGFPPSAIRGHRRADP