Protein Info for AO353_24085 in Pseudomonas fluorescens FW300-N2E3

Annotation: multidrug transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details amino acids 528 to 548 (21 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 886 to 908 (23 residues), see Phobius details amino acids 914 to 935 (22 residues), see Phobius details amino acids 963 to 983 (21 residues), see Phobius details amino acids 989 to 1012 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1010 (1002 residues), 503.2 bits, see alignment E=7.1e-155

Best Hits

KEGG orthology group: None (inferred from 88% identity to ent:Ent638_1874)

Predicted SEED Role

"Cation efflux system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WA11 at UniProt or InterPro

Protein Sequence (1045 amino acids)

>AO353_24085 multidrug transporter (Pseudomonas fluorescens FW300-N2E3)
MSEGRFNLSAIAVRERSITVFLIFLIAVAGILSFFQLGRAEDPPFTVKQLTVITAWPGAT
AQEMQDQVAEPLEKRLQELKWYDRTETYTRPGLAFTMVSLRDSTPPSQVQEEFYQARKKL
DDEARKLPAGVIGPMVNDEFSDVTFALFALKAKGEPQRLLVRDAESLRQQLLHVPGVKKV
NIIGEQPERIFVSFSHDRLATLGVSPQDIFAALNNQNVLTPAGSIESNGPQVFLRLDGAF
DKVQKIRDTPIAVQGRTLKLSDVATIERGYEDPATFLVRNNGEEASLLGIVMREGWNGLD
LGKALDAETVKINEGMPLGMTLSKVTDQSVNISSAVGEFMVKFFVALLVVMLVCFLSMGW
RVGVVVAAAVPLTLAVVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE
GYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWV
VAVAFTPYLGVKMLPNIKKVEGGHAAIYNTRNYNHFRQVLTRVIARKWLVAGTVIAMFGV
AILGMSLVKKQFFPTSDRPEVLIEVQMPYGTSIEQTSATTAKIEAWLQKQDEAKIVTAYI
GQGAPRFYLAMAPELPDPSFAKIVVLTDSQEEREALKFRLREAAAEGLAPEARVRVTQLV
FGPYSPFPVAYRVMGPDPSKLREIAGQVLDVMQSSPMMRTVNTDWGPLTPTLHFALDQDR
LEAVGLTSNSVAQQLQFLLTGVPITAVREDIRSVQVVGRAAGDIRLDPARIEGFTLVGTA
GQRIPLSQVGEVDVRMEDPILRRRDRTPTITVRGDIAEGLQPPDVSSVIMKELQPVIDKL
PDGYRIEQAGAIEESGKAGKAMLPLFPIMIAMTLLIIILQVRSISAMIMVFLTSPLGLIG
VVPTLLIFQQPFGINALVGLIALSGILMRNTLILIGQIHHNAQEGLDPFHAVVEATVQRA
RPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFIGTIMTLVFLPAMYSIWFKIRPDNK
GQLNSETDVAREPGGEDATRPLAVL