Protein Info for AO353_24030 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 52 to 69 (18 residues), see Phobius details amino acids 130 to 151 (22 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 237 to 261 (25 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details PF00664: ABC_membrane" amino acids 55 to 285 (231 residues), 58.1 bits, see alignment E=2.4e-19 PF00005: ABC_tran" amino acids 352 to 501 (150 residues), 105.9 bits, see alignment E=5.6e-34

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 76% identity to pen:PSEEN2497)

Predicted SEED Role

"Putative ABC iron siderophore transporter, fused permease and ATPase domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WKZ4 at UniProt or InterPro

Protein Sequence (589 amino acids)

>AO353_24030 ABC transporter ATP-binding protein (Pseudomonas fluorescens FW300-N2E3)
MLRTFIQLLGDDAPVLRRYLYMTLVYGLLCGLTIVTLVPILTSLLGSETRAAGQWLIALV
IGMVICWALRRTVEKAGIRVGIAVLQRGRHRLGDHVARLPVGWFTAQNTARLSHVASQGM
MEMAQLPAHVFTPLITGVITPVVILIALFALHWQMGLIALVTLPILLGVFVLTARLGQRA
DQDFQYNAAHTSQRMVEFAQAQSVLRAFNGEDGGTQFLEQAIGRQQDSARRLIHVSAMSV
VFNAWAVQASFAALLVAATLWLGELLGASLEAGSVIAVIVSLLLVSRIIDPLLEVAGYSE
VLRGARGQLGAVREIFAVKPLPEPQTPQAPVDGSVELRNVSFRYAEDQADVLHEVSLRIE
PGSMTALVGASGSGKTTLVRLIARFFDVTQGSVIVGGVDVRQMSGEQLASQISQIFQDAY
LFQGSIADNIRIGKPDASDAQVMEAARQAGVVEIIERLPQGLDTPVGEGGARLSGGERQR
ISIARALIKDAPILLVDEATAALDAENQAAIAEALARLRGTRTLIVIAHQLSTVAMADQI
LVLDNGQISERGSHAQLSAKPGLYAHFLAQRRAAKGWRIAGVLGSEDDS