Protein Info for AO353_23980 in Pseudomonas fluorescens FW300-N2E3

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF13407: Peripla_BP_4" amino acids 33 to 296 (264 residues), 67.9 bits, see alignment E=5.3e-23

Best Hits

KEGG orthology group: K10439, ribose transport system substrate-binding protein (inferred from 94% identity to pba:PSEBR_a2262)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WRR3 at UniProt or InterPro

Protein Sequence (339 amino acids)

>AO353_23980 sugar ABC transporter substrate-binding protein (Pseudomonas fluorescens FW300-N2E3)
VIQAQEIVSRATLEAVRWSGPESGPQALRGKSIALVAEDLRNGGIVGVAQGAREAAKAMG
WTLKIFDGAGSSVGRAKAFSDALAAKPDGLILCGSDALENNAALILFANRDVPVVGWHAG
ARPGPIDGTPVAMNVTTDPLEVARLTAMAAVAQSNGHAGVVILTDSKYSIAMAKANAMEN
VIRACRECTLLEVRDVAISESGEKMPTITNELLQRYGKRWTHTLAINDIYFDYSIASLTN
AAIPSDSISLLSAGDGSASAFLRIQAKTYQTVTVAEPLNLHGWQVMDELNRLFAGQPVSG
FVAPIHLVNADNIAFDGGKKFQYDPDNGYRDIYRHQWNP