Protein Info for AO353_23970 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 221 to 246 (26 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 318 to 343 (26 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details PF05977: MFS_3" amino acids 4 to 284 (281 residues), 51.5 bits, see alignment E=6e-18 PF07690: MFS_1" amino acids 15 to 347 (333 residues), 66.4 bits, see alignment E=2.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WKY0 at UniProt or InterPro

Protein Sequence (428 amino acids)

>AO353_23970 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MKLFRPLLQRPVALLWGGLALSSIGDELFAIAVAWMAVQIAGTDASWLSALRGGAALAGA
LLGGIWAERWDHRRTMIGADLARAGLALIPMLAWALDILSLWMLAVPVMLMMIVNSLFEP
ALRASLPRIVAAPDQLQAVNALFDAIIRVARVIGPMLAAAITLLIPLEHLFTLNSLTFLI
SAWAVMKLSTALPRQPVKVTSRRAAFTAGWRSLIGRRQMQVVYVCAGLGNVAWSLGISIG
MALAVVKYDIQGFGVRGFAAYGLIMGAYGCGNLISIFVVGNLHIRRLYGGFTFGSVVNGL
GIATIGAAVMYLPAEYVLVGMMFGAGLAALGGPLIDISFILLIQTTFRQSEIAGLARLRY
AALGASILIAGACGAALYARFETGMVIVGSGIFEVIVGAIVLLVPKDNEAVYANTGEEPL
LDGNEVTR