Protein Info for AO353_23960 in Pseudomonas fluorescens FW300-N2E3

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 342 to 362 (21 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 442 to 464 (23 residues), see Phobius details amino acids 473 to 499 (27 residues), see Phobius details amino acids 548 to 566 (19 residues), see Phobius details amino acids 881 to 899 (19 residues), see Phobius details amino acids 906 to 928 (23 residues), see Phobius details amino acids 934 to 956 (23 residues), see Phobius details amino acids 982 to 1002 (21 residues), see Phobius details amino acids 1011 to 1037 (27 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 3 to 1049 (1047 residues), 1182 bits, see alignment E=0 PF00873: ACR_tran" amino acids 3 to 1038 (1036 residues), 1269.9 bits, see alignment E=0 PF02355: SecD_SecF" amino acids 342 to 498 (157 residues), 23.6 bits, see alignment E=4.7e-09 PF03176: MMPL" amino acids 349 to 501 (153 residues), 40.9 bits, see alignment E=1.9e-14 amino acids 886 to 1049 (164 residues), 27 bits, see alignment E=3.3e-10

Best Hits

KEGG orthology group: None (inferred from 83% identity to avn:Avin_33870)

Predicted SEED Role

"Multidrug efflux transporter MexF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WH04 at UniProt or InterPro

Protein Sequence (1059 amino acids)

>AO353_23960 transporter (Pseudomonas fluorescens FW300-N2E3)
MNFSQFFISRPIFAAVLSLLILIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG
ETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGTDLDNAQVQVQNRVTRSEPKL
PAEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLF
GMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGALGAPPAPNATAFQLSVNTQ
GRLVSEEEFENIIIRSGENGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS
NAIEISNEVRAKMAELKKSFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVIL
FLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE
RNIGLGLTPVEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAIST
VISAFNSLTLSPALAAVLLKSHDAPKDRFSRVLDGIFGGWLFRPFNRFFDRASHGYVGTV
ARVIRSSGIALLLYAGLMALTFLGFSNTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI
KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDQRKDPSQSAGAIAGAL
NGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKETMNIITKSRSVPE
LAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVN
VQAEQQFRLEPDQIGQLKVRNNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAA
PGYSSGQAQQAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ
YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD
KQEEGLDPLSAVLEACRLRLRPILMTSFAFIMGVVPLVFSSGAGAEMRHAMGVAVFSGML
GVTFFGLLLTPVFYVLIRRFVERSDARKAAKALKLEAQQ