Protein Info for AO353_23825 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1609 PF20178: DUF6543" amino acids 814 to 1050 (237 residues), 89.8 bits, see alignment E=1.2e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0S4 at UniProt or InterPro

Protein Sequence (1609 amino acids)

>AO353_23825 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MTDDSLPLFFPEALRDTRILSPRIRAMGFTLADLSWLRNVELATHALRSAQTSPMTVENV
MLKAAGSDAEPLAGSFVMHPVPNGTQAILYTPYGGLQKFDDRQALLKALDDKLKNAAERK
DLLCFLPISRRNALSTDNAFTLAGQVIDGLVFEDQARILKQCHRENVELMLQELSAIPTL
TAMLNQLLNNALRKSFPRLDQSATHVSFFVESRAAGTTNTAIARHQVDSMPLSDALLRFY
LHQTWPSGQVREFTNPLQPSSPVNPVHQYQWEQATKELAASLMPMLASLLQVYWATDVHT
GVSRRDFFAQAMSDKARTDLLLKRQSAIISPEQSLALTALLDRESAIRNNAASDLKPEKI
RIWEHREHFVELAGAMMLNSDSTAYLYTQSNGLQVLKDYADLKAIIQTMVTSAGHDDELY
SLLTRQQRDVFLGFDKPEVSGVPMFGPVFHDMLDDIIAKQQHSITDALDTCRHSDGVIDV
QALFDRALDVRGMLDNQLLATAITERWSTRPLISGDNRPSVVLADKAALSLKTIRSVQSS
LEVKTAAQPSGSVEQQGTFLETIKTDLAHAMSVGIRGEAALRVSTKTLHADEKAIIDTVL
NPDKPTRRQRQALHGFRPDAWSLTLECSNEPDLLPLANCFLLTERGGLDPSHSGRAILWT
PGRGLETFSSVTSVKVELGRRLLDDEQRMLLLENIPRTQYRPHRTYTLGPFRLIERNMLQ
ECQQSAIKQYLDARRHTHSLELPSSVVRADFEQHKQTPTPLNLQRAMQIAEGIVTQQSLP
VWLGAAPESEVLRHVEILEQLRHSIESGKDYLHDVKPLTDYAREQLKALMTRQFPGASLD
PDQLWVTPNLALAGPARTLTDFALSPTNTLQNTGFSIASKIAQTLPTALDASAVKRLLLQ
LDIKATYRQFLSDTLASDAPGVATRLLRFIKQLPWQLLLHAHTLKLQGKLSERGFGLVQQ
VLDMPDALARAAVTGANAIVRPLELIATEGAAAVKTLGLYLIGEPAAGPQILYAPYDKHL
GITEYENEASVLSAINLPGALQDLLIRRLPDPYQATYKNLLAGSGTSDIRLASSPIEGNL
LHQLFIDNKTLLSHMLDSQSQPAGQSDWEALKALFSKGLRYGIEFLPGKLALPRLLWESY
TSFKQSAEALQDHHWRTALKTFINGVSQMATLGQLLHQPGASTVEPVVHNGPVVEKPFVA
TEITKVDLTSPSRTVLQSFEASAIELKKTGTKAVDGSYRDSTTRRKYAPVDGKVYQIEKF
GVATRIVDDQRQGPYLQNRGTQWVLDPDLHSVHFGKAMSRLHNKYQSDLDARKQISIEAQ
GMEAIRQLYPERARMIVQSLDLARFYAFNSLHNLAQLKVATSGTRLDGFLKAFFDVPTID
RAILDKIKATIVPLCKALVDPTLDRLDSKRFVVGSNRYPEDGLIAFVLDDDQQQKVHFTE
KFFDQNLHHYNHVLTEPFDVVAHAQAATLIHEFSHLFSSTLDIAYLEARRPFSDLISTIT
TQASQLKQDQEQFQREALSMHTPVDELFAYWNSTQKTWQDLDDIPAAKHLSGQIKTITGT
SNLSEARRVFRDRASADRRIDTILRNADSVARLVCEMGRQLDPVPLAEN