Protein Info for AO353_23065 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 transmembrane" amino acids 28 to 50 (23 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 285 to 310 (26 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 345 to 368 (24 residues), see Phobius details amino acids 380 to 405 (26 residues), see Phobius details amino acids 412 to 431 (20 residues), see Phobius details PF07690: MFS_1" amino acids 48 to 393 (346 residues), 115 bits, see alignment E=3.9e-37 PF00083: Sugar_tr" amino acids 71 to 210 (140 residues), 72.8 bits, see alignment E=2.8e-24 amino acids 281 to 438 (158 residues), 25.2 bits, see alignment E=7.3e-10

Best Hits

KEGG orthology group: None (inferred from 80% identity to bxe:Bxe_B2998)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0Q7 at UniProt or InterPro

Protein Sequence (440 amino acids)

>AO353_23065 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MSRALTASATSVKPIKTPLTREQIRGFWTVYLGWVLDGVDSVIFALVLIPALTELLPNSG
ITPTPANIAMYGSLLFGLFLIGWGMSFIWGPLADRFGRVKMLAASILVYSLFTGAAAFSE
NIWQLAAFRLIAGIGVGGEWALAGTYVAESWPEDRRKMGAGYLQTGYYFGFFIAALLNYT
VGATYGWRVMFLCGLAPAAVAIYTALKVKEPAQTHKVAHPVAHSPITSARSSWWEIFAPA
FRRRTLTSSALVGVAIVGLWAGSVYEATAVVTLATRAGIDHVGAVHLASIGAAVLSLSTI
LGCLVAPWLAERLGRRLALGIYFAGMATSIVVAFGWVFYMDDGLHLFMVSLVFLGFFGGN
FAIFSLWLPEQYPTRIRATAFAFNASVGRFIGAGVNFLLAAAIHWHGSLGAPIAWTAAAF
VAGMLILPFAVETRDQPLPQ