Protein Info for AO353_22875 in Pseudomonas fluorescens FW300-N2E3

Annotation: cell envelope protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF06863: DUF1254" amino acids 71 to 201 (131 residues), 146.3 bits, see alignment E=6.4e-47 PF06742: DUF1214" amino acids 339 to 450 (112 residues), 112.7 bits, see alignment E=1.4e-36

Best Hits

KEGG orthology group: None (inferred from 75% identity to pfs:PFLU3015)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WM75 at UniProt or InterPro

Protein Sequence (468 amino acids)

>AO353_22875 cell envelope protein (Pseudomonas fluorescens FW300-N2E3)
MTIEKPTRLLLAGLSLLLSASAWADFSASPEEARGIAKDAYLYGFPVVEMYKTLYTQAVD
KNGPNFKAPLNHISNTARAFTPKDTAFVSPNPDTPSSFLWMDLRAEPVVVTLPQIAEERY
YSVQLVDLYTQNFAYLGTRSTGNKGGTFMIAGPNWQGQQPLKIDRLVRSETNIAYALYRT
QLFDEKDLEKVKKIQHGYKVQTLSQYLGQPAPAAVPKIDWPKPTPTMSDSPELFRYLNFM
LGFAPAQDVEKDQLARFAKIGIVAGQPYDLKTLTAEQRKALDDGIADAKAEYAAFKKDKI
DTHQVNNGDLFGTRDHLNNNYLYRYAGANLGIFGNSADEAAKFSYLVDSLGKPANGARHS
YTVHFDKDQLPPADAFWSLTMYDGKTKLLVPNHKKRYLLNSRMLSTFKRDPDGGLTLYLQ
HSEPLKDQRSNWLPAPHGPFYAVLRLYLPQPQVGNGQWKLPPLTPINP